Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm4862-201ENSMUST00000170405 438 ntBASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm21092-201ENSMUST00000178995 955 ntBASIC13.21□□□□□ -0.29
Col6a1Q04857 1700088E04Rik-210ENSMUST00000190509 871 ntTSL 5 BASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm35713-201ENSMUST00000210516 199 ntBASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC13.21□□□□□ -0.29
Col6a1Q04857 AC134860.1-201ENSMUST00000224867 660 ntBASIC13.21□□□□□ -0.29
Col6a1Q04857 Prss51-201ENSMUST00000063785 961 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Col6a1Q04857 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.21□□□□□ -0.29
Col6a1Q04857 Zfp125-201ENSMUST00000079237 2488 ntBASIC13.21□□□□□ -0.29
Col6a1Q04857 Gm11470-201ENSMUST00000118868 1475 ntBASIC13.21□□□□□ -0.3
Col6a1Q04857 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.21□□□□□ -0.3
Col6a1Q04857 Gm6210-201ENSMUST00000204734 1942 ntBASIC13.21□□□□□ -0.3
Col6a1Q04857 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Col6a1Q04857 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Col6a1Q04857 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Col6a1Q04857 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 AC159195.1-201ENSMUST00000225867 2086 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm44942-201ENSMUST00000096093 2072 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm7541-201ENSMUST00000118361 535 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC13.2□□□□□ -0.3
Col6a1Q04857 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm9022-201ENSMUST00000182482 992 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm28686-201ENSMUST00000187404 609 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm17877-201ENSMUST00000192578 814 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm42779-201ENSMUST00000198807 406 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC13.2□□□□□ -0.3
Col6a1Q04857 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm18636-201ENSMUST00000218846 1066 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm3619-201ENSMUST00000219947 775 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC13.2□□□□□ -0.3
Col6a1Q04857 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 AC165260.2-203ENSMUST00000224237 336 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 AC154257.1-202ENSMUST00000224729 843 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Them5-201ENSMUST00000029794 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Gm8617-201ENSMUST00000118796 2222 ntBASIC13.2□□□□□ -0.3
Col6a1Q04857 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.2□□□□□ -0.3
Col6a1Q04857 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Col6a1Q04857 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
Col6a1Q04857 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm22920-201ENSMUST00000102175 109 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm13549-201ENSMUST00000118339 796 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm13328-201ENSMUST00000120816 1020 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm13394-201ENSMUST00000121658 1000 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Rprl1-201ENSMUST00000158050 327 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Zfp637-210ENSMUST00000164472 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm27232-201ENSMUST00000184373 597 ntTSL 3 BASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm5100-201ENSMUST00000195631 589 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Gm44421-201ENSMUST00000205064 1221 ntBASIC13.19□□□□□ -0.3
Col6a1Q04857 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Col6a1Q04857 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms