Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm45428-201ENSMUST00000209619 1789 ntBASIC18.05■□□□□ 0.48
Cux1P53564 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Mterf3-201ENSMUST00000021991 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Gm43773-201ENSMUST00000198548 2162 ntBASIC18.05■□□□□ 0.48
Cux1P53564 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC18.04■□□□□ 0.48
Cux1P53564 AC108858.2-201ENSMUST00000228186 1425 ntBASIC18.04■□□□□ 0.48
Cux1P53564 Gm14274-201ENSMUST00000117182 615 ntBASIC18.04■□□□□ 0.48
Cux1P53564 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC18.04■□□□□ 0.48
Cux1P53564 Gm42433-201ENSMUST00000196806 940 ntBASIC18.04■□□□□ 0.48
Cux1P53564 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Cux1P53564 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Gm44831-201ENSMUST00000208469 2989 ntBASIC18.04■□□□□ 0.48
Cux1P53564 4932431P20Rik-201ENSMUST00000098602 1340 ntBASIC18.04■□□□□ 0.48
Cux1P53564 AC122840.1-201ENSMUST00000220915 3334 ntBASIC18.04■□□□□ 0.48
Cux1P53564 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Cux1P53564 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Gm14497-201ENSMUST00000119537 580 ntBASIC18.03■□□□□ 0.48
Cux1P53564 Gm12453-201ENSMUST00000121981 331 ntBASIC18.03■□□□□ 0.48
Cux1P53564 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Gm42430-201ENSMUST00000197209 616 ntBASIC18.03■□□□□ 0.48
Cux1P53564 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC18.03■□□□□ 0.48
Cux1P53564 Gm39397-201ENSMUST00000212331 228 ntTSL 5 BASIC18.03■□□□□ 0.48
Cux1P53564 Gm40879-201ENSMUST00000220759 612 ntBASIC18.03■□□□□ 0.48
Cux1P53564 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC18.03■□□□□ 0.48
Cux1P53564 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Cux1P53564 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Gm43242-201ENSMUST00000199507 1776 ntBASIC18.03■□□□□ 0.48
Cux1P53564 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC18.03■□□□□ 0.48
Cux1P53564 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Gm8579-201ENSMUST00000201943 733 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC18.03■□□□□ 0.48
Cux1P53564 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC18.03■□□□□ 0.48
Cux1P53564 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Gm18065-201ENSMUST00000221395 526 ntBASIC18.03■□□□□ 0.48
Cux1P53564 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Cux1P53564 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Cux1P53564 Ccdc90b-202ENSMUST00000085017 1494 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
Cux1P53564 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Cux1P53564 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Cux1P53564 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Cux1P53564 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
Cux1P53564 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Sertad3-201ENSMUST00000068641 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Cux1P53564 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 4933425D22Rik-201ENSMUST00000201035 1721 ntBASIC18.02■□□□□ 0.48
Cux1P53564 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Cux1P53564 1700125H20Rik-202ENSMUST00000100681 687 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Cux1P53564 Gm24791-201ENSMUST00000104284 131 ntBASIC18.02■□□□□ 0.47
Cux1P53564 Gm25562-201ENSMUST00000104608 133 ntBASIC18.02■□□□□ 0.47
Cux1P53564 Gm16219-201ENSMUST00000120096 274 ntBASIC18.02■□□□□ 0.47
Cux1P53564 Gm15197-201ENSMUST00000120526 478 ntBASIC18.02■□□□□ 0.47
Cux1P53564 Ighv1-76-201ENSMUST00000169155 294 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Cux1P53564 Ighv1-62-1-202ENSMUST00000171270 90 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Cux1P53564 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC18.02■□□□□ 0.47
Cux1P53564 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC18.02■□□□□ 0.47
Cux1P53564 Gm19640-201ENSMUST00000214849 464 ntBASIC18.02■□□□□ 0.47
Cux1P53564 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Cux1P53564 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Cux1P53564 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC18.02■□□□□ 0.47
Cux1P53564 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Cux1P53564 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Cux1P53564 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms