Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Plekha7-202ENSMUST00000181981 4633 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Zfp426-202ENSMUST00000115562 3557 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gm2383-201ENSMUST00000181461 807 ntBASIC13□□□□□ -0.33
Chmp6P0C0A3 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC13□□□□□ -0.33
Chmp6P0C0A3 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC13□□□□□ -0.33
Chmp6P0C0A3 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13□□□□□ -0.33
Chmp6P0C0A3 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gm4760-201ENSMUST00000119663 1030 ntBASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Gm19994-201ENSMUST00000217086 586 ntBASIC12.99□□□□□ -0.33
Chmp6P0C0A3 CT030182.1-201ENSMUST00000225935 533 ntBASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Chmp6P0C0A3 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Chmp6P0C0A3 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Chmp6P0C0A3 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Chmp6P0C0A3 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Chmp6P0C0A3 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms