Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC9.52□□□□□ -0.89
Hoxd3P09027 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
Hoxd3P09027 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
Hoxd3P09027 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm28649-201ENSMUST00000189153 1581 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm13996-201ENSMUST00000118456 430 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm7350-201ENSMUST00000120964 636 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm13844-201ENSMUST00000134541 581 ntTSL 3 BASIC9.51□□□□□ -0.89
Hoxd3P09027 A330043C09Rik-201ENSMUST00000139823 1009 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm22094-201ENSMUST00000158976 117 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm22693-201ENSMUST00000175049 442 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm27341-201ENSMUST00000183570 106 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm28941-201ENSMUST00000185536 1017 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm37468-201ENSMUST00000194767 854 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm8920-201ENSMUST00000196153 924 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Rps4l-202ENSMUST00000204242 789 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Olfr752-ps1-201ENSMUST00000208736 1141 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Ss18l2-205ENSMUST00000215833 479 ntTSL 3 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 B230118H07Rik-201ENSMUST00000090513 969 ntAPPRIS P2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Gm18227-201ENSMUST00000211082 1468 ntBASIC9.51□□□□□ -0.89
Hoxd3P09027 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Hoxd3P09027 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
Hoxd3P09027 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Gm43721-201ENSMUST00000199677 2313 ntBASIC9.5□□□□□ -0.89
Hoxd3P09027 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC9.5□□□□□ -0.89
Hoxd3P09027 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
Hoxd3P09027 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
Hoxd3P09027 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms