Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Cpsf3Q9QXK7 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Cpsf3Q9QXK7 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 AC156031.2-201ENSMUST00000213107 3310 ntBASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Gm14441-201ENSMUST00000121960 540 ntBASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Gm5733-201ENSMUST00000190232 939 ntBASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Gm2965-201ENSMUST00000198365 343 ntBASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Armt1-203ENSMUST00000118544 5044 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Cpsf3Q9QXK7 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Cald1-205ENSMUST00000115027 4777 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Gm14058-201ENSMUST00000116082 735 ntBASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 B9d1os-201ENSMUST00000137010 674 ntBASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Mir5132-201ENSMUST00000175166 71 ntBASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Gm8100-201ENSMUST00000182906 988 ntBASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cpsf3Q9QXK7 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Nupl1-206ENSMUST00000225111 2936 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm7851-201ENSMUST00000117574 323 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm12566-201ENSMUST00000121479 359 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Gm2553-201ENSMUST00000215986 605 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 AC131330.1-201ENSMUST00000227814 1015 ntBASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cpsf3Q9QXK7 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms