Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Mak-202ENSMUST00000070193 2937 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm15004-201ENSMUST00000119192 630 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm11956-201ENSMUST00000119525 512 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm11660-201ENSMUST00000120955 412 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm4726-201ENSMUST00000135604 736 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm6019-201ENSMUST00000148369 736 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm15881-201ENSMUST00000148792 942 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm9132-201ENSMUST00000210182 832 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 AC122408.1-201ENSMUST00000218949 218 ntBASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Trim54Q9ERP3 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Trim54Q9ERP3 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Cog3-203ENSMUST00000227473 4197 ntBASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm15595-201ENSMUST00000120840 961 ntBASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm22144-201ENSMUST00000157402 102 ntBASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 C330004P14Rik-201ENSMUST00000218833 628 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 CT009713.8-202ENSMUST00000224732 385 ntBASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Trim54Q9ERP3 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Trim54Q9ERP3 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms