Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Gm4607-201ENSMUST00000206649 577 ntBASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gm12266-201ENSMUST00000120311 962 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Mir7070-201ENSMUST00000183657 86 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Mir7677-201ENSMUST00000184226 67 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gm18038-201ENSMUST00000197900 485 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Olfr1347-205ENSMUST00000220413 964 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Vps28Q9D1C8 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm23200-201ENSMUST00000104379 132 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm11511-201ENSMUST00000118146 540 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm17040-202ENSMUST00000170597 889 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Rn7s1-201ENSMUST00000174924 300 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Rn7s2-201ENSMUST00000175032 300 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm26461-201ENSMUST00000175064 290 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm43184-201ENSMUST00000197247 542 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm37131-201ENSMUST00000192502 1561 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm14132-201ENSMUST00000117188 1719 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Ric3-201ENSMUST00000055993 5281 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC12.25□□□□□ -0.45
Vps28Q9D1C8 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms