Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Gm27177-202ENSMUST00000183514 2703 ntBASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Gm8038-201ENSMUST00000164674 2044 ntBASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sf3b1Q99NB9 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm15881-201ENSMUST00000148792 942 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm17391-201ENSMUST00000171036 126 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm8815-201ENSMUST00000173809 620 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm45575-201ENSMUST00000210283 548 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 AC154290.1-201ENSMUST00000223786 1240 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 AC135469.1-201ENSMUST00000225984 772 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm7104-201ENSMUST00000179741 2532 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Sf3b1Q99NB9 AC129931.1-201ENSMUST00000228865 1861 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm12029-201ENSMUST00000120073 832 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm28516-201ENSMUST00000190257 663 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm44545-201ENSMUST00000208262 746 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm2553-201ENSMUST00000215986 605 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm7395-201ENSMUST00000216059 1045 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 AC166992.1-201ENSMUST00000216356 565 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 AC122876.1-201ENSMUST00000217619 825 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm9785-201ENSMUST00000062642 1006 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 AC166574.4-201ENSMUST00000227165 1937 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Gm44999-201ENSMUST00000207456 1493 ntBASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Sf3b1Q99NB9 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms