Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Gm42913-201ENSMUST00000197936 1853 ntBASIC14.4□□□□□ -0.1
Brf1Q8CFK2 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm9034-201ENSMUST00000182071 1005 ntBASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm9192-201ENSMUST00000183221 985 ntBASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm2260-201ENSMUST00000184965 657 ntBASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm28071-201ENSMUST00000190355 478 ntBASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm19287-201ENSMUST00000203190 358 ntBASIC14.39□□□□□ -0.11
Brf1Q8CFK2 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Brf1Q8CFK2 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gm14017-201ENSMUST00000121934 386 ntBASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gstp-ps-201ENSMUST00000195526 631 ntBASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gm42629-201ENSMUST00000199063 1102 ntBASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Gm43773-201ENSMUST00000198548 2162 ntBASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Brf1Q8CFK2 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 AC091458.1-201ENSMUST00000220902 1361 ntBASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Brf1Q8CFK2 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms