Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gm15172-201ENSMUST00000118945 1046 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm11660-201ENSMUST00000120955 412 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm20426-201ENSMUST00000173657 440 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm37246-201ENSMUST00000192665 835 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm9136-201ENSMUST00000193368 454 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm32877-201ENSMUST00000197419 709 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm43138-201ENSMUST00000199123 708 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm45418-202ENSMUST00000210693 649 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gm2594-201ENSMUST00000214774 742 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Vmn1r34-201ENSMUST00000074381 930 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Gnat3-201ENSMUST00000030561 1361 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim47Q8C0E3 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim47Q8C0E3 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm8566-201ENSMUST00000120174 465 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm15063-201ENSMUST00000152648 895 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm8100-201ENSMUST00000182906 988 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm9555-201ENSMUST00000200908 583 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Gm43974-201ENSMUST00000205080 684 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 AC140209.1-201ENSMUST00000227875 284 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 AC117194.1-201ENSMUST00000224847 3002 ntBASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim47Q8C0E3 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Gm14724-201ENSMUST00000118400 537 ntBASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Gm12501-201ENSMUST00000119163 529 ntBASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim47Q8C0E3 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms