Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Mir680-2-201ENSMUST00000102163 110 ntBASIC14.07□□□□□ -0.16
Trim56Q80VI1 Gm23251-201ENSMUST00000103773 110 ntBASIC14.07□□□□□ -0.16
Trim56Q80VI1 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 AC131330.1-201ENSMUST00000227814 1015 ntBASIC14.07□□□□□ -0.16
Trim56Q80VI1 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm43773-201ENSMUST00000198548 2162 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm13461-201ENSMUST00000120980 662 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm2965-201ENSMUST00000198365 343 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm42790-201ENSMUST00000201268 969 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm6867-201ENSMUST00000219165 425 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 CT009713.8-201ENSMUST00000225448 560 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm10288-201ENSMUST00000084614 537 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm6580-201ENSMUST00000117504 1357 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm13910-201ENSMUST00000121752 1428 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gm43289-201ENSMUST00000200537 1475 ntBASIC14.06□□□□□ -0.16
Trim56Q80VI1 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Trim56Q80VI1 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Eno3-202ENSMUST00000108548 1564 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm43068-201ENSMUST00000201095 1273 ntBASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Abhd11os-203ENSMUST00000222613 363 ntBASIC14.05□□□□□ -0.16
Trim56Q80VI1 Gm9785-201ENSMUST00000062642 1006 ntBASIC14.05□□□□□ -0.16
Trim56Q80VI1 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Trim56Q80VI1 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 45.1 ms