Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Rbm14-201ENSMUST00000006625 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Upf3aQ3ULJ3 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm11783-201ENSMUST00000119549 885 ntBASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm17877-201ENSMUST00000192578 814 ntBASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm45113-201ENSMUST00000207518 165 ntBASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 AC124433.1-201ENSMUST00000224483 1063 ntBASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm9873-201ENSMUST00000063891 1097 ntBASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Upf3aQ3ULJ3 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Pphln1-203ENSMUST00000109256 3759 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm26013-201ENSMUST00000104404 119 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm12419-201ENSMUST00000116649 636 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm13937-201ENSMUST00000121000 988 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm7150-201ENSMUST00000122032 981 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm44158-201ENSMUST00000203881 505 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 CT025553.1-201ENSMUST00000226292 299 ntBASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Prss47-202ENSMUST00000203968 1353 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3aQ3ULJ3 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3aQ3ULJ3 Gm44241-201ENSMUST00000203230 1662 ntBASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms