Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rnf40Q3U319 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rnf40Q3U319 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rnf40Q3U319 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rnf40Q3U319 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rnf40Q3U319 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.63□□□□□ -0.39
Rnf40Q3U319 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Rnf40Q3U319 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC12.63□□□□□ -0.39
Rnf40Q3U319 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm38194-201ENSMUST00000194529 2211 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm43937-201ENSMUST00000204640 3122 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Acad9-201ENSMUST00000011492 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Anapc4-201ENSMUST00000031072 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Npepps-201ENSMUST00000001480 4215 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm14743-201ENSMUST00000114026 759 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm14704-201ENSMUST00000120300 874 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Mnd1-ps-201ENSMUST00000162462 604 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Mir6956-201ENSMUST00000183598 62 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm43646-201ENSMUST00000199962 464 ntTSL 3 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Ank2-221ENSMUST00000182994 2715 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Mrrf-201ENSMUST00000028250 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Pdik1l-203ENSMUST00000105877 4674 ntTSL 5 BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm21136-201ENSMUST00000186812 2575 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm6605-201ENSMUST00000031488 2574 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Rnf40Q3U319 Gm42995-201ENSMUST00000197047 1330 ntBASIC12.62□□□□□ -0.39
Rnf40Q3U319 Dsc2-201ENSMUST00000039247 4630 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Slc22a14-201ENSMUST00000093775 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Pip5k1b-201ENSMUST00000025800 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Smim8-205ENSMUST00000108134 782 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm12073-201ENSMUST00000117382 524 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm6027-201ENSMUST00000121467 756 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm12539-201ENSMUST00000121549 1098 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm15929-201ENSMUST00000138926 1161 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm8641-201ENSMUST00000186995 826 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm4034-201ENSMUST00000187674 480 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm37468-201ENSMUST00000194767 854 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm37860-201ENSMUST00000195380 1034 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm5279-201ENSMUST00000199575 745 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm44958-201ENSMUST00000203734 736 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm44872-201ENSMUST00000207864 420 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Gm45259-201ENSMUST00000209217 1006 ntBASIC12.61□□□□□ -0.39
Rnf40Q3U319 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Rnf40Q3U319 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Rnf40Q3U319 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms