Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sox9Q04887 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm12419-201ENSMUST00000116649 636 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm14993-201ENSMUST00000121180 164 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm7150-201ENSMUST00000122032 981 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm22379-201ENSMUST00000157480 131 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm26368-201ENSMUST00000157826 118 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm17070-201ENSMUST00000170463 784 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.37□□□□□ -0.43
Sox9Q04887 Mir6941-201ENSMUST00000184711 59 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Sec13-201ENSMUST00000032440 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm43045-201ENSMUST00000198725 2095 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Gm37648-201ENSMUST00000192072 2563 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC12.37□□□□□ -0.43
Sox9Q04887 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.37□□□□□ -0.43
Sox9Q04887 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sox9Q04887 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
Sox9Q04887 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC12.36□□□□□ -0.43
Sox9Q04887 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Gm23912-201ENSMUST00000104687 87 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC12.36□□□□□ -0.43
Sox9Q04887 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Cbx7-202ENSMUST00000109615 710 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC12.36□□□□□ -0.43
Sox9Q04887 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Gm3250-201ENSMUST00000167358 693 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Sox9Q04887 Gm3238-201ENSMUST00000168298 693 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Sox9Q04887 Gm25998-201ENSMUST00000175397 53 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 1700065I16Rik-201ENSMUST00000185277 512 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 Gm5700-201ENSMUST00000191483 989 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 C230057A21Rik-202ENSMUST00000195781 600 ntTSL 3 BASIC12.36□□□□□ -0.43
Sox9Q04887 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 Gm42433-201ENSMUST00000196806 940 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Gm43912-201ENSMUST00000204352 538 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Uqcc3-201ENSMUST00000096253 829 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Sox9Q04887 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 AC154747.3-201ENSMUST00000224471 3470 ntBASIC12.36□□□□□ -0.43
Sox9Q04887 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sox9Q04887 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Sox9Q04887 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.35□□□□□ -0.43
Sox9Q04887 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sox9Q04887 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms