Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 CT025602.2-201ENSMUST00000226553 772 ntBASIC18.08■□□□□ 0.49
Cux1P53564 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Cux1P53564 E330011O21Rik-202ENSMUST00000209498 1403 ntTSL 5 BASIC18.08■□□□□ 0.48
Cux1P53564 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Cux1P53564 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cux1P53564 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
Cux1P53564 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cux1P53564 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
Cux1P53564 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cux1P53564 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cux1P53564 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Cux1P53564 Apoc3-202ENSMUST00000118649 453 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Cux1P53564 Gm13284-201ENSMUST00000121020 547 ntBASIC18.08■□□□□ 0.48
Cux1P53564 Gm5700-201ENSMUST00000191483 989 ntBASIC18.08■□□□□ 0.48
Cux1P53564 Gm42655-201ENSMUST00000202782 1134 ntBASIC18.08■□□□□ 0.48
Cux1P53564 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Cux1P53564 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC18.07■□□□□ 0.48
Cux1P53564 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Airn-205ENSMUST00000161890 1375 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Cux1P53564 Gm18986-201ENSMUST00000216029 1986 ntBASIC18.07■□□□□ 0.48
Cux1P53564 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Cux1P53564 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Gm5434-202ENSMUST00000222384 1451 ntBASIC18.07■□□□□ 0.48
Cux1P53564 Clec10a-201ENSMUST00000000327 1454 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Gm5434-201ENSMUST00000071825 1451 ntBASIC18.07■□□□□ 0.48
Cux1P53564 Gm13019-201ENSMUST00000120000 276 ntBASIC18.07■□□□□ 0.48
Cux1P53564 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC18.07■□□□□ 0.48
Cux1P53564 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Gm30946-201ENSMUST00000198288 724 ntBASIC18.07■□□□□ 0.48
Cux1P53564 Gm6390-201ENSMUST00000215034 589 ntBASIC18.07■□□□□ 0.48
Cux1P53564 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Cux1P53564 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Cux1P53564 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Gm8111-201ENSMUST00000117659 987 ntBASIC18.06■□□□□ 0.48
Cux1P53564 Gm13422-201ENSMUST00000118834 504 ntBASIC18.06■□□□□ 0.48
Cux1P53564 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC18.06■□□□□ 0.48
Cux1P53564 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC18.06■□□□□ 0.48
Cux1P53564 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Fxyd5-209ENSMUST00000162087 762 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
Cux1P53564 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Mir6923-201ENSMUST00000184592 72 ntBASIC18.06■□□□□ 0.48
Cux1P53564 Gm37019-201ENSMUST00000192133 2134 ntBASIC18.06■□□□□ 0.48
Cux1P53564 Bcap31-201ENSMUST00000002091 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC18.06■□□□□ 0.48
Cux1P53564 Lect2-202ENSMUST00000225183 823 ntBASIC18.06■□□□□ 0.48
Cux1P53564 Retnla-201ENSMUST00000023329 598 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Cux1P53564 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Gm38577-201ENSMUST00000221531 4545 ntBASIC18.05■□□□□ 0.48
Cux1P53564 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Cux1P53564 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Gm13445-201ENSMUST00000121664 307 ntBASIC18.05■□□□□ 0.48
Cux1P53564 Ins2-208ENSMUST00000162317 297 ntTSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC18.05■□□□□ 0.48
Cux1P53564 Zfp1-202ENSMUST00000211926 1409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 AC130477.1-201ENSMUST00000226982 420 ntBASIC18.05■□□□□ 0.48
Cux1P53564 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Cux1P53564 Ccdc153-201ENSMUST00000092426 1087 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
Cux1P53564 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 76 ms