Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Shmt1P50431 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
Shmt1P50431 AC091458.1-201ENSMUST00000220902 1361 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Gm13611-201ENSMUST00000118269 318 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC12.62□□□□□ -0.39
Shmt1P50431 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC12.62□□□□□ -0.39
Shmt1P50431 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Gm8546-201ENSMUST00000178288 1264 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC12.62□□□□□ -0.39
Shmt1P50431 Gm37246-201ENSMUST00000192665 835 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Gm19287-201ENSMUST00000203190 358 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.62□□□□□ -0.39
Shmt1P50431 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Shmt1P50431 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Shmt1P50431 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC12.62□□□□□ -0.39
Shmt1P50431 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Shmt1P50431 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Gm7851-201ENSMUST00000117574 323 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Gm14724-201ENSMUST00000118400 537 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Gm8199-201ENSMUST00000121323 823 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Shmt1P50431 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Gm5732-201ENSMUST00000182596 1007 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Gm9192-201ENSMUST00000183221 985 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Gm4482-201ENSMUST00000200876 742 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Gm45118-201ENSMUST00000208928 825 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Spcs1-203ENSMUST00000226374 592 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 AC131330.1-201ENSMUST00000227814 1015 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC12.61□□□□□ -0.39
Shmt1P50431 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.61□□□□□ -0.39
Shmt1P50431 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Shmt1P50431 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Shmt1P50431 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Shmt1P50431 Gm14441-201ENSMUST00000121960 540 ntBASIC12.6□□□□□ -0.39
Shmt1P50431 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.6□□□□□ -0.39
Shmt1P50431 Gm24514-201ENSMUST00000174961 285 ntBASIC12.6□□□□□ -0.39
Shmt1P50431 Gm8100-201ENSMUST00000182906 988 ntBASIC12.6□□□□□ -0.39
Shmt1P50431 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Shmt1P50431 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.6□□□□□ -0.39
Shmt1P50431 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC12.6□□□□□ -0.39
Shmt1P50431 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.6□□□□□ -0.39
Shmt1P50431 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Shmt1P50431 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Shmt1P50431 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Shmt1P50431 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.6□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms