Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Usp4P35123 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Usp4P35123 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Nol4-204ENSMUST00000097651 4549 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Gm37931-201ENSMUST00000194686 2866 ntBASIC12.53□□□□□ -0.4
Usp4P35123 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Mir3102-201ENSMUST00000175555 104 ntBASIC12.53□□□□□ -0.4
Usp4P35123 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.53□□□□□ -0.4
Usp4P35123 Gm37466-201ENSMUST00000195692 652 ntBASIC12.53□□□□□ -0.4
Usp4P35123 Gm18584-201ENSMUST00000203098 964 ntBASIC12.53□□□□□ -0.4
Usp4P35123 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.53□□□□□ -0.4
Usp4P35123 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Usp4P35123 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Usp4P35123 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC12.53□□□□□ -0.4
Usp4P35123 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Spats2l-211ENSMUST00000169772 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Usp4P35123 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC12.52□□□□□ -0.4
Usp4P35123 Ccdc189-201ENSMUST00000072155 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Usp4P35123 Gaa-203ENSMUST00000106259 3633 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Usp4P35123 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Usp4P35123 Gm24255-201ENSMUST00000104481 128 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
Usp4P35123 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.52□□□□□ -0.41
Usp4P35123 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC12.52□□□□□ -0.41
Usp4P35123 Gm3890-201ENSMUST00000182416 207 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Usp4P35123 Gm37259-201ENSMUST00000193903 849 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Gm21769-201ENSMUST00000211922 111 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Gm8420-201ENSMUST00000097103 598 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Gm3287-205ENSMUST00000228893 1332 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Rad51b-202ENSMUST00000171210 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.52□□□□□ -0.41
Usp4P35123 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp4P35123 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp4P35123 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Gm44207-201ENSMUST00000204568 1424 ntBASIC12.52□□□□□ -0.41
Usp4P35123 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Usp4P35123 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC12.52□□□□□ -0.41
Usp4P35123 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Usp4P35123 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Usp4P35123 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.51□□□□□ -0.41
Usp4P35123 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Usp4P35123 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms