Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm6082-201ENSMUST00000215204 454 ntBASIC11.45□□□□□ -0.58
Lire1P11260 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Lire1P11260 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Myh13-201ENSMUST00000081911 5817 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Lire1P11260 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Pcdha6-201ENSMUST00000193389 4653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Trp53inp2-201ENSMUST00000043237 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Lire1P11260 Tmod2-202ENSMUST00000098552 9871 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC11.44□□□□□ -0.58
Lire1P11260 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Nfic-201ENSMUST00000020461 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Ing3-202ENSMUST00000115389 2546 ntTSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Gm14726-201ENSMUST00000120623 896 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Gm2383-201ENSMUST00000181461 807 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Gm4819-201ENSMUST00000182170 1009 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.44□□□□□ -0.58
Lire1P11260 AC132317.1-201ENSMUST00000227227 962 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Gm6015-201ENSMUST00000217493 1586 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Gm37931-201ENSMUST00000194686 2866 ntBASIC11.44□□□□□ -0.58
Lire1P11260 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 1700019J19Rik-205ENSMUST00000216531 2813 ntTSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Slc6a9-202ENSMUST00000063857 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Lire1P11260 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Parvg-207ENSMUST00000163667 2700 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Lire1P11260 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Adamdec1-201ENSMUST00000022641 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Lire1P11260 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Lire1P11260 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.43□□□□□ -0.58
Lire1P11260 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Gm17376-201ENSMUST00000166016 84 ntBASIC11.43□□□□□ -0.58
Lire1P11260 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC11.43□□□□□ -0.58
Lire1P11260 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC11.43□□□□□ -0.58
Lire1P11260 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.43□□□□□ -0.58
Lire1P11260 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Lire1P11260 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Wipf1-203ENSMUST00000102680 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Lire1P11260 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Gm9466-201ENSMUST00000218144 2246 ntBASIC11.43□□□□□ -0.58
Lire1P11260 Stra6-202ENSMUST00000085677 2725 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Lire1P11260 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms