Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Fads1-201ENSMUST00000010807 3456 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Chmp6P0C0A3 Gm37014-201ENSMUST00000194723 2253 ntBASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Gm37513-201ENSMUST00000194830 2268 ntBASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Gm38378-201ENSMUST00000195153 2268 ntBASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.32
Chmp6P0C0A3 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Map1b-203ENSMUST00000223725 2669 ntBASIC13.02□□□□□ -0.32
Chmp6P0C0A3 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm14644-201ENSMUST00000116671 647 ntBASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm14130-201ENSMUST00000118417 987 ntBASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Mettl1-202ENSMUST00000120542 1044 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 CT573034.1-201ENSMUST00000222983 313 ntBASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Src-201ENSMUST00000029175 3906 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Gm44831-201ENSMUST00000208469 2989 ntBASIC13.02□□□□□ -0.33
Chmp6P0C0A3 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm23912-201ENSMUST00000104687 87 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Rprl1-201ENSMUST00000158050 327 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm32999-201ENSMUST00000192693 562 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm19187-201ENSMUST00000206781 892 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm18056-201ENSMUST00000207670 568 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm18061-201ENSMUST00000208350 562 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm18063-201ENSMUST00000208529 568 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm18052-201ENSMUST00000208750 559 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 AC154252.2-201ENSMUST00000223593 767 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Mir433-201ENSMUST00000093564 124 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Chmp6P0C0A3 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms