Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC14.11□□□□□ -0.15
Col3a1P08121 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Col3a1P08121 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 4930535L15Rik-201ENSMUST00000175891 536 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Eef1b2-209ENSMUST00000188524 681 ntTSL 3 BASIC14.11□□□□□ -0.15
Col3a1P08121 Gm5100-201ENSMUST00000195631 589 ntBASIC14.11□□□□□ -0.15
Col3a1P08121 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Col3a1P08121 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC14.11□□□□□ -0.15
Col3a1P08121 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC14.11□□□□□ -0.15
Col3a1P08121 AC122346.3-201ENSMUST00000223983 306 ntBASIC14.11□□□□□ -0.15
Col3a1P08121 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col3a1P08121 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Col3a1P08121 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col3a1P08121 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC14.1□□□□□ -0.15
Col3a1P08121 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Gm15978-201ENSMUST00000161043 738 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Gm21778-201ENSMUST00000178779 471 ntBASIC14.1□□□□□ -0.15
Col3a1P08121 Gm8531-201ENSMUST00000188319 893 ntBASIC14.1□□□□□ -0.15
Col3a1P08121 CT010506.1-201ENSMUST00000223673 349 ntBASIC14.1□□□□□ -0.15
Col3a1P08121 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col3a1P08121 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC14.1□□□□□ -0.15
Col3a1P08121 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Col3a1P08121 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col3a1P08121 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Col3a1P08121 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
Col3a1P08121 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Col3a1P08121 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Col3a1P08121 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC14.09□□□□□ -0.15
Col3a1P08121 Gm13047-201ENSMUST00000117116 815 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Gm11500-201ENSMUST00000118237 601 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC14.09□□□□□ -0.15
Col3a1P08121 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC14.09□□□□□ -0.15
Col3a1P08121 Gm25492-201ENSMUST00000157383 129 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Gm15744-201ENSMUST00000161734 213 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Gm25951-201ENSMUST00000175330 64 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC14.09□□□□□ -0.15
Col3a1P08121 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC14.09□□□□□ -0.15
Col3a1P08121 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
Col3a1P08121 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 AC174797.2-202ENSMUST00000225729 568 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Gm23680-201ENSMUST00000083162 164 ntBASIC14.09□□□□□ -0.15
Col3a1P08121 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Col3a1P08121 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col3a1P08121 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Col3a1P08121 Gm44190-201ENSMUST00000205083 1401 ntBASIC14.08□□□□□ -0.15
Col3a1P08121 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Col3a1P08121 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Col3a1P08121 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Col3a1P08121 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 66 ms