Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Gm38187-201ENSMUST00000195609 4709 ntBASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trim3Q9R1R2 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm14832-201ENSMUST00000121289 322 ntBASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm24845-201ENSMUST00000158034 109 ntBASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm8494-201ENSMUST00000178171 1233 ntBASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm28882-201ENSMUST00000185504 314 ntBASIC11.29□□□□□ -0.6
Trim3Q9R1R2 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm13097-201ENSMUST00000210722 397 ntBASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trim3Q9R1R2 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Scn10a-201ENSMUST00000084787 6416 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm14109-201ENSMUST00000118814 309 ntBASIC11.28□□□□□ -0.6
Trim3Q9R1R2 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm27046-201ENSMUST00000182160 463 ntBASIC11.28□□□□□ -0.6
Trim3Q9R1R2 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms