Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Gm18827-201ENSMUST00000188341 790 ntBASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Gm21811-201ENSMUST00000096485 930 ntBASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Gm37472-201ENSMUST00000192342 4052 ntBASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Cpsf3Q9QXK7 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Gm14724-201ENSMUST00000118400 537 ntBASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Gm8566-201ENSMUST00000120174 465 ntBASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Gm5369-201ENSMUST00000217499 588 ntBASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Cpsf3Q9QXK7 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm13035-201ENSMUST00000117496 342 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm12501-201ENSMUST00000119163 529 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm4310-201ENSMUST00000177847 889 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm9192-201ENSMUST00000183221 985 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm28686-201ENSMUST00000187404 609 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm4482-201ENSMUST00000200876 742 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Gm44136-201ENSMUST00000203819 1106 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 AC151275.1-201ENSMUST00000224870 585 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Cpsf3Q9QXK7 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms