Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm9630-201ENSMUST00000178304 885 ntBASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm4034-201ENSMUST00000187674 480 ntBASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Trim54Q9ERP3 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.99□□□□□ -0.33
Trim54Q9ERP3 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm27438-201ENSMUST00000183480 110 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 3110080O07Rik-201ENSMUST00000193469 1021 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm44551-201ENSMUST00000208804 171 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gm45575-201ENSMUST00000210283 548 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 9530020I12Rik-203ENSMUST00000219371 819 ntTSL 3 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Scoc-202ENSMUST00000167525 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 AC159195.1-201ENSMUST00000225867 2086 ntBASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.98□□□□□ -0.33
Trim54Q9ERP3 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Gm21998-201ENSMUST00000117552 1308 ntBASIC12.97□□□□□ -0.33
Trim54Q9ERP3 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Gm12208-201ENSMUST00000122004 163 ntBASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Mrnip-201ENSMUST00000020647 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 AC098716.1-201ENSMUST00000213527 703 ntBASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 AC159103.1-201ENSMUST00000228325 429 ntBASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Trim54Q9ERP3 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms