Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm7857-201ENSMUST00000117957 358 ntBASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm12217-201ENSMUST00000118858 696 ntBASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm12380-201ENSMUST00000119012 544 ntBASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Vps28Q9D1C8 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm23949-201ENSMUST00000104027 127 ntBASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm14247-201ENSMUST00000120950 237 ntBASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Vps28Q9D1C8 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.27□□□□□ -0.44
Vps28Q9D1C8 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Gm4909-201ENSMUST00000118749 794 ntBASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Gm12164-201ENSMUST00000121695 551 ntBASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Vps28Q9D1C8 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms