Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Ddx56Q9D0R4 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm15271-201ENSMUST00000134627 2110 ntTSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm37348-201ENSMUST00000193104 1789 ntBASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Tut1-201ENSMUST00000096239 2747 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm13296-201ENSMUST00000117854 997 ntBASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm11511-201ENSMUST00000118146 540 ntBASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Ddx56Q9D0R4 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ddx56Q9D0R4 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ddx56Q9D0R4 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm13350-201ENSMUST00000120519 479 ntBASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm14441-201ENSMUST00000121960 540 ntBASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm7584-201ENSMUST00000175829 940 ntBASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm8856-201ENSMUST00000185254 1144 ntBASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Gm44967-201ENSMUST00000207047 631 ntBASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 AC123619.2-202ENSMUST00000225097 1568 ntBASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ddx56Q9D0R4 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms