Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm44241-201ENSMUST00000203230 1662 ntBASIC14.1□□□□□ -0.15
Trim56Q80VI1 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Arhgap11a-201ENSMUST00000102545 4958 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Fbxo39-201ENSMUST00000108504 1708 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Capn3-205ENSMUST00000110719 2778 ntTSL 5 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm7851-201ENSMUST00000117574 323 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm12566-201ENSMUST00000121479 359 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm23699-201ENSMUST00000158835 135 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm8100-201ENSMUST00000182906 988 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 Mir6979-201ENSMUST00000183927 56 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm38117-201ENSMUST00000194653 939 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 AC113082.1-201ENSMUST00000217324 327 ntBASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Trim56Q80VI1 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Trim56Q80VI1 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Trim56Q80VI1 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Trim56Q80VI1 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Trim56Q80VI1 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Trim56Q80VI1 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
Trim56Q80VI1 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm11663-201ENSMUST00000117888 290 ntBASIC14.08□□□□□ -0.16
Trim56Q80VI1 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm37246-201ENSMUST00000192665 835 ntBASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Gm45575-201ENSMUST00000210283 548 ntBASIC14.08□□□□□ -0.16
Trim56Q80VI1 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 E330021D16Rik-203ENSMUST00000204830 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Trim56Q80VI1 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Trim56Q80VI1 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms