Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Gm38117-201ENSMUST00000194653 939 ntBASIC10.92□□□□□ -0.66
Usf1Q61069 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Gm7902-201ENSMUST00000198842 947 ntBASIC10.92□□□□□ -0.66
Usf1Q61069 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC10.92□□□□□ -0.66
Usf1Q61069 Gm18059-201ENSMUST00000208073 580 ntBASIC10.92□□□□□ -0.66
Usf1Q61069 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC10.92□□□□□ -0.66
Usf1Q61069 AC165154.1-201ENSMUST00000226661 340 ntBASIC10.92□□□□□ -0.66
Usf1Q61069 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Usf1Q61069 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC10.92□□□□□ -0.66
Usf1Q61069 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
Usf1Q61069 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
Usf1Q61069 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Usf1Q61069 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC10.91□□□□□ -0.66
Usf1Q61069 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC10.91□□□□□ -0.66
Usf1Q61069 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC10.91□□□□□ -0.66
Usf1Q61069 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC10.91□□□□□ -0.66
Usf1Q61069 Gm13022-201ENSMUST00000121181 285 ntBASIC10.91□□□□□ -0.66
Usf1Q61069 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Usf1Q61069 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC10.91□□□□□ -0.66
Usf1Q61069 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC10.91□□□□□ -0.66
Usf1Q61069 Gm43778-201ENSMUST00000199438 199 ntBASIC10.91□□□□□ -0.66
Usf1Q61069 Gm44882-201ENSMUST00000205702 802 ntBASIC10.91□□□□□ -0.66
Usf1Q61069 Gm7972-202ENSMUST00000208453 505 ntTSL 3 BASIC10.91□□□□□ -0.66
Usf1Q61069 AC126799.1-201ENSMUST00000221976 246 ntBASIC10.91□□□□□ -0.66
Usf1Q61069 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Rab7-201ENSMUST00000095048 1275 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC10.91□□□□□ -0.66
Usf1Q61069 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Usf1Q61069 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
Usf1Q61069 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 AC166836.1-201ENSMUST00000219933 1795 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm44851-201ENSMUST00000205735 2309 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm10305-201ENSMUST00000195331 2475 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm11422-201ENSMUST00000118925 1103 ntBASIC10.9□□□□□ -0.66
Usf1Q61069 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
Usf1Q61069 Gm12990-201ENSMUST00000120372 468 ntBASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms