Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Trim41Q5NCC3 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trim41Q5NCC3 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Ighv7-1-201ENSMUST00000103474 363 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm9507-202ENSMUST00000180157 654 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm10731-201ENSMUST00000181171 448 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm6644-201ENSMUST00000186507 951 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm5100-201ENSMUST00000195631 589 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 AC154436.1-201ENSMUST00000227272 782 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm13910-201ENSMUST00000121752 1428 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm43807-201ENSMUST00000200678 1781 ntBASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trim41Q5NCC3 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm6189-201ENSMUST00000164487 2082 ntBASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Elobl-203ENSMUST00000121228 704 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm29410-201ENSMUST00000188383 694 ntBASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm9916-201ENSMUST00000192943 1228 ntBASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm9645-201ENSMUST00000197131 792 ntBASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm5714-201ENSMUST00000197343 566 ntBASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Ap3s1-202ENSMUST00000224622 978 ntBASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Trim41Q5NCC3 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Trim41Q5NCC3 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Trim41Q5NCC3 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Trim41Q5NCC3 Gm5780-201ENSMUST00000217774 1834 ntBASIC20.83■□□□□ 0.92
Trim41Q5NCC3 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm26013-201ENSMUST00000104404 119 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm14193-201ENSMUST00000105067 153 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm15207-201ENSMUST00000119259 442 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm12453-201ENSMUST00000121981 331 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm14717-201ENSMUST00000140450 649 ntTSL 3 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm23958-201ENSMUST00000157207 105 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm17798-201ENSMUST00000182282 1035 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm29304-201ENSMUST00000186555 695 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm18351-201ENSMUST00000188646 883 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm29223-201ENSMUST00000188867 695 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm37436-201ENSMUST00000193842 1085 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm37921-201ENSMUST00000194333 695 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm2553-201ENSMUST00000215986 605 ntBASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Gstm2-202ENSMUST00000066530 854 ntTSL 3 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
Trim41Q5NCC3 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms