Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm13786-201ENSMUST00000122371 333 ntBASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm6222-202ENSMUST00000182143 629 ntBASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.65□□□□□ -0.54
Col28a1Q2UY11 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Ncoa6-203ENSMUST00000109670 7101 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Matn2-201ENSMUST00000022947 3551 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Lax1-201ENSMUST00000169295 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Tbc1d14-210ENSMUST00000140607 4649 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Gm45496-201ENSMUST00000209918 2917 ntBASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC11.65□□□□□ -0.54
Col28a1Q2UY11 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.55
Col28a1Q2UY11 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Rftn1-202ENSMUST00000113195 2385 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm22323-201ENSMUST00000103832 109 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm9083-201ENSMUST00000120423 819 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm11597-201ENSMUST00000121423 964 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm16379-201ENSMUST00000161469 348 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Mir5132-201ENSMUST00000175166 71 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm27320-201ENSMUST00000184892 109 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm18304-201ENSMUST00000189162 546 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm8762-201ENSMUST00000193486 339 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm4768-201ENSMUST00000206199 686 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 CT573034.1-201ENSMUST00000222983 313 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Mir433-201ENSMUST00000093564 124 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm17230-201ENSMUST00000171194 3942 ntBASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Zmynd8-220ENSMUST00000170272 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Kirrel2-201ENSMUST00000045817 3352 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Col28a1Q2UY11 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.63□□□□□ -0.55
Col28a1Q2UY11 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC11.63□□□□□ -0.55
Col28a1Q2UY11 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms