Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Gm44891-201ENSMUST00000208817 2223 ntBASIC10.26□□□□□ -0.77
Col8a1Q00780 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Col8a1Q00780 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC10.26□□□□□ -0.77
Col8a1Q00780 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm43134-201ENSMUST00000199434 1886 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm25063-201ENSMUST00000104666 94 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 A230006K03Rik-201ENSMUST00000107533 977 ntTSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm15352-201ENSMUST00000118696 270 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm15036-201ENSMUST00000118880 400 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm7722-201ENSMUST00000120646 741 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm23045-201ENSMUST00000175041 96 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm4654-201ENSMUST00000183305 982 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm29410-201ENSMUST00000188383 694 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm45856-201ENSMUST00000212752 416 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm3619-201ENSMUST00000219947 775 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm9661-201ENSMUST00000221611 1122 ntBASIC10.25□□□□□ -0.77
Col8a1Q00780 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Gm35040-201ENSMUST00000206829 5094 ntTSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Rpap1-203ENSMUST00000110793 5458 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC10.25□□□□□ -0.77
Col8a1Q00780 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
Col8a1Q00780 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm11663-201ENSMUST00000117888 290 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm16166-201ENSMUST00000118291 787 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm5100-201ENSMUST00000195631 589 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm44158-201ENSMUST00000203881 505 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm45575-201ENSMUST00000210283 548 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm7959-201ENSMUST00000221823 1078 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm4604-201ENSMUST00000025040 390 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gm44241-201ENSMUST00000203230 1662 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col8a1Q00780 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
Col8a1Q00780 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
Col8a1Q00780 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC10.24□□□□□ -0.77
Col8a1Q00780 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms