Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC11.52□□□□□ -0.57
Sox3P53784 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
Sox3P53784 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC11.52□□□□□ -0.57
Sox3P53784 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Sox3P53784 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.57
Sox3P53784 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sox3P53784 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC11.51□□□□□ -0.57
Sox3P53784 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Gm5638-201ENSMUST00000118618 1258 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Gm6039-201ENSMUST00000121667 1250 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Rmrp-201ENSMUST00000157463 271 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox3P53784 Gm19287-201ENSMUST00000203190 358 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.51□□□□□ -0.57
Sox3P53784 Gm45598-202ENSMUST00000210719 986 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 AC154176.1-201ENSMUST00000225897 220 ntBASIC11.51□□□□□ -0.57
Sox3P53784 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.51□□□□□ -0.57
Sox3P53784 AC169036.1-201ENSMUST00000227994 296 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Sox3P53784 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 AC159308.2-201ENSMUST00000213592 2325 ntBASIC11.51□□□□□ -0.57
Sox3P53784 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Sox3P53784 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Sox3P53784 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
Sox3P53784 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.5□□□□□ -0.57
Sox3P53784 Gm37324-201ENSMUST00000194500 4504 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC11.5□□□□□ -0.57
Sox3P53784 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Mir680-2-201ENSMUST00000102163 110 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Gm23251-201ENSMUST00000103773 110 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC11.5□□□□□ -0.57
Sox3P53784 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Gm15711-201ENSMUST00000118889 535 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Gm11941-201ENSMUST00000119904 610 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Gm14704-201ENSMUST00000120300 874 ntBASIC11.5□□□□□ -0.57
Sox3P53784 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC11.5□□□□□ -0.57
Sox3P53784 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
Sox3P53784 Gm17889-201ENSMUST00000198410 598 ntBASIC11.5□□□□□ -0.57
Sox3P53784 AY036118-201ENSMUST00000200021 923 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC11.5□□□□□ -0.57
Sox3P53784 AC174797.2-202ENSMUST00000225729 568 ntBASIC11.5□□□□□ -0.57
Sox3P53784 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Sox3P53784 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms