Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Rfx1P48377 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC14.28□□□□□ -0.12
Rfx1P48377 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Rfx1P48377 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Rfx1P48377 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Gm37969-201ENSMUST00000195777 3409 ntBASIC14.27□□□□□ -0.12
Rfx1P48377 Gm3836-201ENSMUST00000211377 1613 ntBASIC14.27□□□□□ -0.12
Rfx1P48377 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Gm7553-201ENSMUST00000185805 1426 ntBASIC14.27□□□□□ -0.12
Rfx1P48377 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC14.27□□□□□ -0.12
Rfx1P48377 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Rfx1P48377 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC14.27□□□□□ -0.12
Rfx1P48377 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
Rfx1P48377 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Rfx1P48377 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.27□□□□□ -0.13
Rfx1P48377 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC14.27□□□□□ -0.13
Rfx1P48377 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC14.27□□□□□ -0.13
Rfx1P48377 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 AC153929.1-201ENSMUST00000219009 303 ntBASIC14.27□□□□□ -0.13
Rfx1P48377 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Cpn2-201ENSMUST00000064856 4583 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC14.27□□□□□ -0.13
Rfx1P48377 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC14.27□□□□□ -0.13
Rfx1P48377 B3glct-201ENSMUST00000100404 4570 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Rfx1P48377 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Rfx1P48377 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC14.26□□□□□ -0.13
Rfx1P48377 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm24934-201ENSMUST00000103764 111 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 Gm23912-201ENSMUST00000104687 87 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC14.26□□□□□ -0.13
Rfx1P48377 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm25261-201ENSMUST00000157416 134 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC14.26□□□□□ -0.13
Rfx1P48377 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm29127-201ENSMUST00000188304 517 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm9794-201ENSMUST00000202370 423 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC14.26□□□□□ -0.13
Rfx1P48377 AC122459.1-201ENSMUST00000228373 885 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Rfx1P48377 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
Rfx1P48377 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Magel2-201ENSMUST00000080403 4631 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Rfx1P48377 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Rfx1P48377 Gm9796-201ENSMUST00000062249 2250 ntBASIC14.26□□□□□ -0.13
Rfx1P48377 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Foxred1-201ENSMUST00000043805 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
Rfx1P48377 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Rfx1P48377 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Rfx1P48377 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Rfx1P48377 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rfx1P48377 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC14.25□□□□□ -0.13
Rfx1P48377 Gm4984-201ENSMUST00000115987 360 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms