Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm13142-201ENSMUST00000117213 1453 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm13744-201ENSMUST00000118953 850 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm9083-201ENSMUST00000120423 819 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm16158-201ENSMUST00000123509 785 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm11588-201ENSMUST00000141758 658 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm37452-201ENSMUST00000194416 1160 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 4930599N24Rik-201ENSMUST00000198822 1003 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm45598-202ENSMUST00000210719 986 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Mettl6-204ENSMUST00000227595 1027 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Cbx3-202ENSMUST00000094623 1080 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Olfr1098-201ENSMUST00000099872 948 ntAPPRIS P1 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm18626-201ENSMUST00000221512 1409 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Mettl13-201ENSMUST00000028017 4541 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm7171-201ENSMUST00000177413 1349 ntBASIC9.54□□□□□ -0.88
Hoxd3P09027 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
Hoxd3P09027 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
Hoxd3P09027 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Olfr1511-202ENSMUST00000214168 1468 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Hoxd3P09027 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
Hoxd3P09027 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC9.53□□□□□ -0.88
Hoxd3P09027 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 AC125108.1-201ENSMUST00000218986 2330 ntBASIC9.53□□□□□ -0.88
Hoxd3P09027 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC9.53□□□□□ -0.88
Hoxd3P09027 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm14743-201ENSMUST00000114026 759 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm24590-201ENSMUST00000116699 119 ntBASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm12788-201ENSMUST00000119090 308 ntBASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm13924-201ENSMUST00000119899 486 ntBASIC9.53□□□□□ -0.88
Hoxd3P09027 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC9.53□□□□□ -0.88
Hoxd3P09027 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
Hoxd3P09027 Gm24990-201ENSMUST00000157406 323 ntBASIC9.53□□□□□ -0.88
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms