Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Tbcel-203ENSMUST00000125995 4849 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Nup210-202ENSMUST00000113509 6893 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 March6-201ENSMUST00000090227 6260 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Pkd1l2-201ENSMUST00000098375 7386 ntAPPRIS P2 TSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Thrb-202ENSMUST00000022304 6200 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Ryr1-202ENSMUST00000179893 15358 ntAPPRIS P2 TSL 5 BASIC9.88□□□□□ -0.83
Hmgb3O54879 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC9.88□□□□□ -0.83
Hmgb3O54879 Gm42498-201ENSMUST00000199981 1372 ntBASIC9.88□□□□□ -0.83
Hmgb3O54879 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Dusp11-201ENSMUST00000032071 6435 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Per1-202ENSMUST00000101004 3507 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm15983-201ENSMUST00000140000 4814 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Stk36-201ENSMUST00000087183 5245 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Ctnnd1-220ENSMUST00000111694 6362 ntAPPRIS P5 TSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm16479-201ENSMUST00000121706 932 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm16296-201ENSMUST00000159905 325 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm9022-201ENSMUST00000182482 992 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm5896-201ENSMUST00000189662 1024 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm44882-201ENSMUST00000205702 802 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm18473-201ENSMUST00000220543 868 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm7446-201ENSMUST00000221035 1240 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Pcdh15-233ENSMUST00000191709 5346 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Rbm4b-201ENSMUST00000036744 1783 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Dcaf8-202ENSMUST00000191689 2754 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Cdh23-204ENSMUST00000105463 10991 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Styx-205ENSMUST00000226873 12974 ntAPPRIS P1 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Fmnl1-207ENSMUST00000218163 3824 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
Hmgb3O54879 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm10339-203ENSMUST00000225409 1671 ntBASIC9.87□□□□□ -0.83
Hmgb3O54879 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
Hmgb3O54879 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Cdc42ep4-202ENSMUST00000106616 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Lrrn4-201ENSMUST00000049787 3715 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC9.86□□□□□ -0.83
Hmgb3O54879 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
Hmgb3O54879 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC9.86□□□□□ -0.83
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms