Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Mir8093-201ENSMUST00000185043 137 ntBASIC14.34□□□□□ -0.11
Ube4aE9Q735 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC14.34□□□□□ -0.11
Ube4aE9Q735 Gm31597-201ENSMUST00000211176 515 ntTSL 2 BASIC14.34□□□□□ -0.11
Ube4aE9Q735 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 AC134869.4-202ENSMUST00000224350 837 ntBASIC14.34□□□□□ -0.11
Ube4aE9Q735 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Chit1-203ENSMUST00000160060 1580 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ube4aE9Q735 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube4aE9Q735 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube4aE9Q735 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube4aE9Q735 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ube4aE9Q735 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Gm28388-201ENSMUST00000186262 437 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 Gm38210-201ENSMUST00000191944 809 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 Gm37981-201ENSMUST00000194280 535 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 Pmvk-204ENSMUST00000198440 978 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Gm8342-201ENSMUST00000209839 757 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 Gm2875-201ENSMUST00000211333 360 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 AC132901.1-201ENSMUST00000224345 508 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 AC124433.1-201ENSMUST00000224483 1063 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Mirlet7i-201ENSMUST00000083472 85 ntBASIC14.33□□□□□ -0.12
Ube4aE9Q735 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ube4aE9Q735 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm7224-201ENSMUST00000121359 2066 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Dctn1-205ENSMUST00000113919 4292 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Rpl9-ps7-201ENSMUST00000140507 579 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm37905-201ENSMUST00000195310 341 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm43058-201ENSMUST00000197645 625 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm8574-201ENSMUST00000203207 924 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm44593-201ENSMUST00000208372 1249 ntTSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Rpl9-ps4-201ENSMUST00000075549 579 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm5451-201ENSMUST00000080545 579 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Zfp125-201ENSMUST00000079237 2488 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.32□□□□□ -0.12
Ube4aE9Q735 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ube4aE9Q735 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ube4aE9Q735 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC14.31□□□□□ -0.12
Ube4aE9Q735 Srsf5-201ENSMUST00000094693 1527 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube4aE9Q735 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube4aE9Q735 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube4aE9Q735 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ube4aE9Q735 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms