Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 AC158355.1-201ENSMUST00000215895 1705 ntBASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm11660-201ENSMUST00000120955 412 ntBASIC11.73□□□□□ -0.53
Chd3B1AR17 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Chd3B1AR17 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC11.73□□□□□ -0.53
Chd3B1AR17 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm14193-201ENSMUST00000105067 153 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm13611-201ENSMUST00000118269 318 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm11667-201ENSMUST00000119828 486 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm11836-201ENSMUST00000121022 441 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Ginm1-202ENSMUST00000065124 300 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC11.72□□□□□ -0.53
Chd3B1AR17 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 AC138329.2-201ENSMUST00000225579 1842 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm9540-201ENSMUST00000188230 478 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Gm38117-201ENSMUST00000194653 939 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 AC127270.1-201ENSMUST00000221441 491 ntTSL 3 BASIC11.72□□□□□ -0.53
Chd3B1AR17 AC166344.1-201ENSMUST00000223745 674 ntBASIC11.72□□□□□ -0.53
Chd3B1AR17 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Chd3B1AR17 D17H6S53E-201ENSMUST00000061859 2142 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC11.72□□□□□ -0.53
Chd3B1AR17 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Chd3B1AR17 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm43061-201ENSMUST00000198850 2241 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Chd3B1AR17 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm14058-201ENSMUST00000116082 735 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm15131-201ENSMUST00000119124 595 ntBASIC11.71□□□□□ -0.53
Chd3B1AR17 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC11.71□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms