Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm8885-201ENSMUST00000189382 598 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm45925-201ENSMUST00000218882 744 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 AC154305.4-201ENSMUST00000224520 614 ntBASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Slx4ip-206ENSMUST00000180277 2723 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Smc1aQ9CU62 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Spop-201ENSMUST00000107722 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Nynrin-201ENSMUST00000100529 6990 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Gm25043-201ENSMUST00000158604 212 ntBASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 AC169036.1-201ENSMUST00000227994 296 ntBASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Smc1aQ9CU62 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Smc1aQ9CU62 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC13.46□□□□□ -0.26
Smc1aQ9CU62 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Smc1aQ9CU62 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Smc1aQ9CU62 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Smc1aQ9CU62 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Smc1aQ9CU62 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Arl8b-201ENSMUST00000032196 4443 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm5638-201ENSMUST00000118618 1258 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm16099-202ENSMUST00000151873 660 ntTSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm44405-201ENSMUST00000198952 126 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm35960-201ENSMUST00000202712 767 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Nr5a2-202ENSMUST00000168126 3446 ntTSL 5 BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
Smc1aQ9CU62 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 59 ms