Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm14058-201ENSMUST00000116082 735 ntBASIC14.12□□□□□ -0.15
Trim56Q80VI1 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Mir5132-201ENSMUST00000175166 71 ntBASIC14.12□□□□□ -0.15
Trim56Q80VI1 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm9555-201ENSMUST00000200908 583 ntBASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Trim56Q80VI1 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Gm12501-201ENSMUST00000119163 529 ntBASIC14.11□□□□□ -0.15
Trim56Q80VI1 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC14.11□□□□□ -0.15
Trim56Q80VI1 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim56Q80VI1 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Trim56Q80VI1 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.11□□□□□ -0.15
Trim56Q80VI1 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm14724-201ENSMUST00000118400 537 ntBASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm6506-201ENSMUST00000119775 1136 ntBASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm8199-201ENSMUST00000121323 823 ntBASIC14.1□□□□□ -0.15
Trim56Q80VI1 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm42980-201ENSMUST00000200582 1028 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Gm4482-201ENSMUST00000200876 742 ntBASIC14.1□□□□□ -0.15
Trim56Q80VI1 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Trim56Q80VI1 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms