Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Nlrc3-203ENSMUST00000177551 5403 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm2546-201ENSMUST00000182630 991 ntBASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm18615-201ENSMUST00000222919 1031 ntBASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 AC132260.2-201ENSMUST00000224482 344 ntBASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gpr19-203ENSMUST00000111932 1711 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Gm6992-201ENSMUST00000217973 1607 ntBASIC12.19□□□□□ -0.46
Sh3rf1Q69ZI1 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Abi1-209ENSMUST00000140164 3403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm2606-201ENSMUST00000100754 1002 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm24830-201ENSMUST00000102024 166 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm12012-201ENSMUST00000118857 1066 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm25890-201ENSMUST00000177643 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Rnu1b2-201ENSMUST00000178073 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Rnu1b1-201ENSMUST00000178250 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm22614-201ENSMUST00000178300 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm8099-201ENSMUST00000200510 742 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm3786-201ENSMUST00000202659 378 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm7293-201ENSMUST00000216682 1007 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm22042-201ENSMUST00000082989 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm26232-201ENSMUST00000083360 166 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm24136-201ENSMUST00000083374 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Rnu1b6-201ENSMUST00000083839 166 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm26110-201ENSMUST00000083971 165 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm10782-202ENSMUST00000223775 1480 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sh3rf1Q69ZI1 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Abcb8-201ENSMUST00000073076 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sh3rf1Q69ZI1 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms