Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Map1b-203ENSMUST00000223725 2669 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Ssxb10-201ENSMUST00000103003 879 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Ighv1-62-3-201ENSMUST00000103532 405 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Krt40-202ENSMUST00000107443 1080 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Cst8-202ENSMUST00000109947 804 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm5530-201ENSMUST00000117185 985 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm16166-201ENSMUST00000118291 787 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm14270-201ENSMUST00000118388 846 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Mrps36-ps2-201ENSMUST00000118658 309 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm5395-201ENSMUST00000121650 915 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm11365-201ENSMUST00000144277 774 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm22379-201ENSMUST00000157480 131 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm28686-201ENSMUST00000187404 609 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm29286-202ENSMUST00000187736 537 ntTSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm21577-201ENSMUST00000190823 697 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm20802-201ENSMUST00000190832 698 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm28987-201ENSMUST00000191071 537 ntTSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Fgfr3-ps-201ENSMUST00000195511 1137 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm7815-201ENSMUST00000196104 832 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Olfr1310-201ENSMUST00000207169 1009 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col9a1Q05722 4933431C10Rik-201ENSMUST00000208973 1266 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 4933407I05Rik-202ENSMUST00000213467 420 ntTSL 2 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm39404-201ENSMUST00000216350 313 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 AC163651.2-202ENSMUST00000222628 1192 ntTSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Rpl22l1-201ENSMUST00000043867 552 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm6564-201ENSMUST00000075377 619 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Olfr1231-201ENSMUST00000099786 942 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm5466-201ENSMUST00000119395 1890 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Col9a1Q05722 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Col9a1Q05722 Gm4782-201ENSMUST00000168705 2046 ntBASIC12.1□□□□□ -0.47
Col9a1Q05722 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Col9a1Q05722 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col9a1Q05722 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm23604-201ENSMUST00000104311 132 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 Pigp-201ENSMUST00000113905 758 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm16149-201ENSMUST00000117631 309 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm13094-201ENSMUST00000117930 409 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Mir7221-201ENSMUST00000184009 72 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 4930554C24Rik-201ENSMUST00000187735 1084 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm38135-201ENSMUST00000195068 502 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC12.09□□□□□ -0.47
Col9a1Q05722 Cers3-202ENSMUST00000208521 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC12.09□□□□□ -0.47
Col9a1Q05722 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 mt-Nd1-201ENSMUST00000082392 957 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col9a1Q05722 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Col9a1Q05722 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.09□□□□□ -0.47
Col9a1Q05722 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Col9a1Q05722 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms