Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Col18a1P39061 Ino80dos-201ENSMUST00000138611 1576 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm12745-201ENSMUST00000121767 214 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm26906-201ENSMUST00000180523 1228 ntTSL 5 BASIC15.5■□□□□ 0.07
Col18a1P39061 Milr1-206ENSMUST00000182896 918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Milr1-207ENSMUST00000182908 811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm2474-201ENSMUST00000195162 559 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 Ighv1-60-201ENSMUST00000195816 405 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC15.5■□□□□ 0.07
Col18a1P39061 AC159002.1-201ENSMUST00000226714 924 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm42748-201ENSMUST00000199354 2341 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Col18a1P39061 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC15.5■□□□□ 0.07
Col18a1P39061 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Teddm3-201ENSMUST00000170665 1346 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm28424-201ENSMUST00000187393 1319 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm44065-201ENSMUST00000203184 3527 ntBASIC15.5■□□□□ 0.07
Col18a1P39061 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Col18a1P39061 Gm6755-201ENSMUST00000100598 864 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Gm6740-201ENSMUST00000100617 864 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Ighv8-11-201ENSMUST00000103536 358 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Col18a1P39061 Focad-202ENSMUST00000107147 1177 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Ankrd60-201ENSMUST00000109112 833 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
Col18a1P39061 Ncbp2-202ENSMUST00000115178 515 ntTSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Cav2-203ENSMUST00000115462 694 ntTSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Tctex1d1-205ENSMUST00000140654 891 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
Col18a1P39061 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Gm6548-201ENSMUST00000167498 1165 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Olfml3-204ENSMUST00000169286 874 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Gm43106-201ENSMUST00000199485 637 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Chac2-201ENSMUST00000020553 1018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Gm44758-201ENSMUST00000206096 2068 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Col18a1P39061 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Col18a1P39061 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC15.49■□□□□ 0.07
Col18a1P39061 Defa-ps17-201ENSMUST00000121849 171 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 4930533B01Rik-201ENSMUST00000123377 1029 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC15.49■□□□□ 0.07
Col18a1P39061 Tnni1-204ENSMUST00000139986 651 ntTSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 Atad3aos-202ENSMUST00000150777 650 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Gm7928-201ENSMUST00000181249 701 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC15.49■□□□□ 0.07
Col18a1P39061 AC103672.1-201ENSMUST00000227502 365 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Pgk1-rs7-201ENSMUST00000085735 1255 ntBASIC15.49■□□□□ 0.07
Col18a1P39061 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Col18a1P39061 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
Col18a1P39061 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Col18a1P39061 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Trgv2-201ENSMUST00000103563 491 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Col18a1P39061 Gm12736-201ENSMUST00000119330 236 ntBASIC15.48■□□□□ 0.07
Col18a1P39061 Gm27316-201ENSMUST00000184884 277 ntBASIC15.48■□□□□ 0.07
Col18a1P39061 Gm8643-201ENSMUST00000195228 625 ntBASIC15.48■□□□□ 0.07
Col18a1P39061 4930509H03Rik-201ENSMUST00000196088 1215 ntBASIC15.48■□□□□ 0.07
Col18a1P39061 Gm32786-201ENSMUST00000211351 628 ntTSL 3 BASIC15.48■□□□□ 0.07
Col18a1P39061 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC15.48■□□□□ 0.07
Col18a1P39061 Tnfsf9-201ENSMUST00000039490 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Cstb-201ENSMUST00000005185 603 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Col18a1P39061 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Col18a1P39061 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col18a1P39061 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms