Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Arfgap3-202ENSMUST00000226124 2461 ntAPPRIS ALT2 BASIC11.49□□□□□ -0.57
Lire1P11260 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Lire1P11260 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC11.48□□□□□ -0.57
Lire1P11260 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Duxbl1-201ENSMUST00000049793 2266 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Gm10434-201ENSMUST00000101158 471 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC11.48□□□□□ -0.57
Lire1P11260 Gm8805-201ENSMUST00000117848 313 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Gm6222-202ENSMUST00000182143 629 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC11.48□□□□□ -0.57
Lire1P11260 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Gm18584-201ENSMUST00000203098 964 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC11.48□□□□□ -0.57
Lire1P11260 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.48□□□□□ -0.57
Lire1P11260 AC022775.2-201ENSMUST00000227885 646 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Lire1P11260 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 AC164161.2-201ENSMUST00000217446 1730 ntTSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Gm45089-201ENSMUST00000208082 2040 ntBASIC11.48□□□□□ -0.57
Lire1P11260 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
Lire1P11260 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 L3mbtl1-201ENSMUST00000035751 2724 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Inpp4a-206ENSMUST00000132615 3038 ntTSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Tmem161a-201ENSMUST00000002413 3018 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Mapre2-203ENSMUST00000118826 3052 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Bod1l-201ENSMUST00000050556 10540 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Lire1P11260 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
Lire1P11260 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Lire1P11260 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Lire1P11260 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Lire1P11260 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC11.47□□□□□ -0.57
Lire1P11260 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC11.47□□□□□ -0.57
Lire1P11260 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
Lire1P11260 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Gm7809-201ENSMUST00000153199 742 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.47□□□□□ -0.57
Lire1P11260 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Lire1P11260 Gm3890-201ENSMUST00000182416 207 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Gm6458-201ENSMUST00000211573 635 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Gm5363-201ENSMUST00000211927 938 ntBASIC11.47□□□□□ -0.57
Lire1P11260 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 115.7 ms