Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Chmp6P0C0A3 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm6963-201ENSMUST00000147879 379 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm8885-201ENSMUST00000189382 598 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm4857-201ENSMUST00000192718 785 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm44882-201ENSMUST00000205702 802 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Gm9176-201ENSMUST00000219955 1120 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Chmp6P0C0A3 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm42943-201ENSMUST00000199676 3242 ntBASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm45495-201ENSMUST00000200940 1700 ntBASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.06□□□□□ -0.32
Chmp6P0C0A3 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Chmp6P0C0A3 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Chmp6P0C0A3 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Chmp6P0C0A3 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Chmp6P0C0A3 Gm43908-201ENSMUST00000205074 1472 ntBASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 43.6 ms