Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm44152-201ENSMUST00000205007 1691 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm23596-201ENSMUST00000104304 132 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm15432-201ENSMUST00000121106 195 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Chtf8-203ENSMUST00000176090 615 ntTSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm37835-201ENSMUST00000193305 361 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 AC159819.2-201ENSMUST00000216151 342 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC11.75□□□□□ -0.53
Chd3B1AR17 Gm18636-201ENSMUST00000218846 1066 ntBASIC11.75□□□□□ -0.53
Chd3B1AR17 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Chd3B1AR17 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.74□□□□□ -0.53
Chd3B1AR17 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Slc7a4-207ENSMUST00000172164 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm8731-201ENSMUST00000118088 412 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm12201-201ENSMUST00000120657 1234 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm12208-201ENSMUST00000122004 163 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm24844-201ENSMUST00000158679 127 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm5051-201ENSMUST00000204085 485 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm45118-201ENSMUST00000208928 825 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 AC122408.1-201ENSMUST00000218949 218 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 AC154290.1-201ENSMUST00000223786 1240 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Matn2-203ENSMUST00000226766 3252 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Chd3B1AR17 CT009757.3-201ENSMUST00000223367 2320 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm7851-201ENSMUST00000117574 323 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm22144-201ENSMUST00000157402 102 ntBASIC11.74□□□□□ -0.53
Chd3B1AR17 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.74□□□□□ -0.53
Chd3B1AR17 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC11.74□□□□□ -0.53
Chd3B1AR17 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Chd3B1AR17 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Chd3B1AR17 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Chd3B1AR17 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC11.73□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms