Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC22.68■■□□□ 1.22
Prpf40aQ9R1C7 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40aQ9R1C7 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Prpf40aQ9R1C7 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40aQ9R1C7 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40aQ9R1C7 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC22.67■■□□□ 1.22
Prpf40aQ9R1C7 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Prpf40aQ9R1C7 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC22.67■■□□□ 1.22
Prpf40aQ9R1C7 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Prpf40aQ9R1C7 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Prpf40aQ9R1C7 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Gm10399-202ENSMUST00000202768 748 ntBASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Prpf40aQ9R1C7 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Prpf40aQ9R1C7 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
Prpf40aQ9R1C7 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Prpf40aQ9R1C7 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Prpf40aQ9R1C7 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC22.63■■□□□ 1.21
Prpf40aQ9R1C7 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
Prpf40aQ9R1C7 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Prpf40aQ9R1C7 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC22.6■■□□□ 1.21
Prpf40aQ9R1C7 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC22.59■■□□□ 1.21
Prpf40aQ9R1C7 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Prpf40aQ9R1C7 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Prpf40aQ9R1C7 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Prpf40aQ9R1C7 AC164883.3-201ENSMUST00000227396 1774 ntBASIC22.58■■□□□ 1.21
Prpf40aQ9R1C7 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC22.58■■□□□ 1.21
Prpf40aQ9R1C7 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Prpf40aQ9R1C7 Kdm3b-204ENSMUST00000224715 2032 ntBASIC22.58■■□□□ 1.2
Prpf40aQ9R1C7 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.2
Prpf40aQ9R1C7 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC22.58■■□□□ 1.2
Prpf40aQ9R1C7 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Prpf40aQ9R1C7 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Prpf40aQ9R1C7 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Prpf40aQ9R1C7 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC22.57■■□□□ 1.2
Prpf40aQ9R1C7 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Prpf40aQ9R1C7 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
Prpf40aQ9R1C7 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Prpf40aQ9R1C7 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC22.56■■□□□ 1.2
Prpf40aQ9R1C7 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC22.56■■□□□ 1.2
Prpf40aQ9R1C7 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms