Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Hmgn3Q9DCB1 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgn3Q9DCB1 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgn3Q9DCB1 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC19.4■□□□□ 0.7
Hmgn3Q9DCB1 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgn3Q9DCB1 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgn3Q9DCB1 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgn3Q9DCB1 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Hmgn3Q9DCB1 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Gm11599-201ENSMUST00000118720 878 ntBASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgn3Q9DCB1 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgn3Q9DCB1 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Hmgn3Q9DCB1 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgn3Q9DCB1 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgn3Q9DCB1 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgn3Q9DCB1 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgn3Q9DCB1 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgn3Q9DCB1 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgn3Q9DCB1 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgn3Q9DCB1 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Hmgn3Q9DCB1 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgn3Q9DCB1 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgn3Q9DCB1 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.33■□□□□ 0.69
Hmgn3Q9DCB1 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Hmgn3Q9DCB1 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.33■□□□□ 0.69
Hmgn3Q9DCB1 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Hmgn3Q9DCB1 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 Mir3960-201ENSMUST00000198213 73 ntBASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Hmgn3Q9DCB1 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 AC154454.1-201ENSMUST00000225253 216 ntBASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Hmgn3Q9DCB1 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms