Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.35■□□□□ 0.53
Snrnp40Q6PE01 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Snrnp40Q6PE01 Gm43060-201ENSMUST00000200621 289 ntBASIC18.35■□□□□ 0.53
Snrnp40Q6PE01 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Snrnp40Q6PE01 Gm10493-201ENSMUST00000097270 612 ntBASIC18.35■□□□□ 0.53
Snrnp40Q6PE01 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Snrnp40Q6PE01 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Snrnp40Q6PE01 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Snrnp40Q6PE01 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Snrnp40Q6PE01 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Snrnp40Q6PE01 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Gm26571-201ENSMUST00000181399 666 ntBASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Gm42569-201ENSMUST00000200539 472 ntBASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Spcs1-204ENSMUST00000226782 949 ntBASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Snrnp40Q6PE01 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.32■□□□□ 0.52
Snrnp40Q6PE01 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Snrnp40Q6PE01 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.32■□□□□ 0.52
Snrnp40Q6PE01 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Snrnp40Q6PE01 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Snrnp40Q6PE01 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Snrnp40Q6PE01 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Snrnp40Q6PE01 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Snrnp40Q6PE01 Gm27405-201ENSMUST00000184201 112 ntBASIC18.31■□□□□ 0.52
Snrnp40Q6PE01 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC18.31■□□□□ 0.52
Snrnp40Q6PE01 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Snrnp40Q6PE01 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Snrnp40Q6PE01 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Snrnp40Q6PE01 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Gm42642-201ENSMUST00000200683 355 ntBASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.29■□□□□ 0.52
Snrnp40Q6PE01 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Gm43530-201ENSMUST00000195920 274 ntBASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Snrnp40Q6PE01 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC18.27■□□□□ 0.52
Snrnp40Q6PE01 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Snrnp40Q6PE01 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Snrnp40Q6PE01 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Snrnp40Q6PE01 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
Snrnp40Q6PE01 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Snrnp40Q6PE01 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Snrnp40Q6PE01 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Gm40848-201ENSMUST00000221998 324 ntBASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Snrnp40Q6PE01 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms