Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col11a1Q61245 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col11a1Q61245 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col11a1Q61245 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col11a1Q61245 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Col11a1Q61245 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC23.83■■□□□ 1.41
Col11a1Q61245 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col11a1Q61245 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
Col11a1Q61245 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Col11a1Q61245 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Col11a1Q61245 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC23.82■■□□□ 1.4
Col11a1Q61245 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC23.82■■□□□ 1.4
Col11a1Q61245 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC23.82■■□□□ 1.4
Col11a1Q61245 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Col11a1Q61245 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Col11a1Q61245 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC23.82■■□□□ 1.4
Col11a1Q61245 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC23.82■■□□□ 1.4
Col11a1Q61245 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col11a1Q61245 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col11a1Q61245 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col11a1Q61245 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col11a1Q61245 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Col11a1Q61245 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC23.8■■□□□ 1.4
Col11a1Q61245 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Col11a1Q61245 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Col11a1Q61245 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
Col11a1Q61245 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC23.8■■□□□ 1.4
Col11a1Q61245 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Col11a1Q61245 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col11a1Q61245 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col11a1Q61245 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col11a1Q61245 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC23.79■■□□□ 1.4
Col11a1Q61245 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col11a1Q61245 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col11a1Q61245 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
Col11a1Q61245 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
Col11a1Q61245 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col11a1Q61245 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Col11a1Q61245 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col11a1Q61245 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col11a1Q61245 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC23.77■■□□□ 1.4
Col11a1Q61245 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC23.77■■□□□ 1.4
Col11a1Q61245 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC23.77■■□□□ 1.4
Col11a1Q61245 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Col11a1Q61245 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Col11a1Q61245 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Col11a1Q61245 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
Col11a1Q61245 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col11a1Q61245 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Col11a1Q61245 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Col11a1Q61245 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC23.75■■□□□ 1.39
Col11a1Q61245 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col11a1Q61245 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col11a1Q61245 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col11a1Q61245 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC23.74■■□□□ 1.39
Col11a1Q61245 Smad6-203ENSMUST00000179458 273 ntBASIC23.74■■□□□ 1.39
Col11a1Q61245 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col11a1Q61245 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Col11a1Q61245 Gm12669-201ENSMUST00000122162 1009 ntBASIC23.73■■□□□ 1.39
Col11a1Q61245 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC23.73■■□□□ 1.39
Col11a1Q61245 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Col11a1Q61245 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC23.73■■□□□ 1.39
Col11a1Q61245 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Col11a1Q61245 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Col11a1Q61245 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC23.72■■□□□ 1.39
Col11a1Q61245 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Col11a1Q61245 AC165080.2-201ENSMUST00000217491 1530 ntBASIC23.71■■□□□ 1.39
Col11a1Q61245 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC23.71■■□□□ 1.39
Col11a1Q61245 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC23.71■■□□□ 1.39
Col11a1Q61245 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC23.71■■□□□ 1.39
Col11a1Q61245 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC23.71■■□□□ 1.39
Col11a1Q61245 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Col11a1Q61245 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Col11a1Q61245 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Col11a1Q61245 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col11a1Q61245 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Col11a1Q61245 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col11a1Q61245 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Col11a1Q61245 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Col11a1Q61245 AC153890.1-201ENSMUST00000220021 2469 ntBASIC23.69■■□□□ 1.38
Col11a1Q61245 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Col11a1Q61245 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Col11a1Q61245 Gm18671-201ENSMUST00000214826 683 ntBASIC23.69■■□□□ 1.38
Col11a1Q61245 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Col11a1Q61245 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Col11a1Q61245 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Col11a1Q61245 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Col11a1Q61245 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Col11a1Q61245 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC23.68■■□□□ 1.38
Col11a1Q61245 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC23.68■■□□□ 1.38
Col11a1Q61245 AV356131-201ENSMUST00000206201 750 ntBASIC23.68■■□□□ 1.38
Col11a1Q61245 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC23.67■■□□□ 1.38
Col11a1Q61245 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Col11a1Q61245 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Col11a1Q61245 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC23.67■■□□□ 1.38
Col11a1Q61245 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Col11a1Q61245 AC166356.1-201ENSMUST00000228236 1426 ntBASIC23.67■■□□□ 1.38
Col11a1Q61245 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC23.66■■□□□ 1.38
Col11a1Q61245 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Col11a1Q61245 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms