Protein–RNA interactions for Protein: Q5R1H8

Trav8d-1, T cell receptor alpha variable 8D-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8d-1Q5R1H8 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Trav8d-1Q5R1H8 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 AC117245.4-201ENSMUST00000217388 1646 ntBASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Trav8d-1Q5R1H8 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Trav8d-1Q5R1H8 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Gm15043-201ENSMUST00000118843 1543 ntBASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
Trav8d-1Q5R1H8 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trav8d-1Q5R1H8 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC16.77■□□□□ 0.27
Trav8d-1Q5R1H8 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Trav8d-1Q5R1H8 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Trav8d-1Q5R1H8 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC16.77■□□□□ 0.27
Trav8d-1Q5R1H8 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC16.76■□□□□ 0.27
Trav8d-1Q5R1H8 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Gm43403-201ENSMUST00000198011 1786 ntBASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trav8d-1Q5R1H8 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trav8d-1Q5R1H8 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Gm10420-201ENSMUST00000121713 882 ntBASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 AC151971.4-201ENSMUST00000214717 704 ntBASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trav8d-1Q5R1H8 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trav8d-1Q5R1H8 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav8d-1Q5R1H8 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav8d-1Q5R1H8 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trav8d-1Q5R1H8 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trav8d-1Q5R1H8 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms