Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col27a1Q5QNQ9 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Col27a1Q5QNQ9 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col27a1Q5QNQ9 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col27a1Q5QNQ9 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col27a1Q5QNQ9 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Col27a1Q5QNQ9 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col27a1Q5QNQ9 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col27a1Q5QNQ9 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Col27a1Q5QNQ9 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col27a1Q5QNQ9 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.57■□□□□ 0.88
Col27a1Q5QNQ9 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Nespas-201ENSMUST00000143738 1083 ntBASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col27a1Q5QNQ9 Gm12933-201ENSMUST00000120203 872 ntBASIC20.55■□□□□ 0.88
Col27a1Q5QNQ9 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col27a1Q5QNQ9 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col27a1Q5QNQ9 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col27a1Q5QNQ9 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
Col27a1Q5QNQ9 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col27a1Q5QNQ9 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col27a1Q5QNQ9 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col27a1Q5QNQ9 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col27a1Q5QNQ9 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Col27a1Q5QNQ9 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col27a1Q5QNQ9 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col27a1Q5QNQ9 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col27a1Q5QNQ9 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
Col27a1Q5QNQ9 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col27a1Q5QNQ9 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 AC166356.1-201ENSMUST00000228236 1426 ntBASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Col27a1Q5QNQ9 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col27a1Q5QNQ9 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Col27a1Q5QNQ9 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col27a1Q5QNQ9 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col27a1Q5QNQ9 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Col27a1Q5QNQ9 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms